Planes. Japan has a very good but complicated transportation system that includes, intercity buses, trains, and of course planes. From the Bay Area the main direct airports are Haneda (HND) or Narita (NRT) near Tokyo or Osaka airport (KIX). Odds are your tour is starting somewhere else so you’ll likely need to get to your start town from either Tokyo or Osaka airports. Flying is generally easy but keep in mind that most intra-Japan or domestic flights from Tokyo originate at Haneda, not Narita. If you fly into Narita, you may have to transfer to Haneda to catch your connecting flight; Narita has a limited number of domestic flights. If you fly into Narita, you can transfer to Haneda either by train or limo bus. Keep in mind that clearing passport control, retrieving your luggage and getting through customs takes time. That will be true at Haneda too as you’ll have to go through check-in and security. The time it takes by train or limo bus is about two hours depending somewhat on Tokyo traffic (for the limo bus). So you’ll need to set aside about five hours to complete the transfer comfortably. If you can, it’s better to fly into Haneda instead of Narita if you plan to catch a domestic flight.
If you don’t want to rush, you can try a layover in Tokyo or at an airport hotel and proceed to your final destination the following day. A flight from SF to Tokyo is about eleven hours. If you tend to be exhausted after a long flight or perhaps you can’t relax and sleep on a Trans-Pacific flight, then a layover may make sense for you as long as you’ve set aside that extra day. We usually try to get to the destination city right away even though we may be tired. But we have done a layover in Tokyo and taken the Shinkansen—“bullet” train—from there to Kanazawa. One advantage of flying is that navigating the airport is much simpler than going into Tokyo to your hotel and then getting to a train station to catch a train.

By the way, the procedure for using airport limousine service in larger cities is usually to proceed to the stop where there will be an electronic kiosk for paying your fare and getting a ticket. (Be sure to have cash in order to pay.) When the limo bus arrives, you load your bags into the undercarriage before showing or giving your ticket to the driver and boarding. Depending on the route you may need to know which stop to debark from. But there is electronic signage and audio informing you of the next stop so you do not miss your stop. At your stop the driver and the ground assistant do not unload your bags and you will have to do that.
Airports in Japan function very similarly to airports here but there are a few differences. Here in the US almost all flights depart from a terminal. But as in Europe large airports in Japan often have flights that aren’t at a terminal jetway; instead you take a shuttle bus from the terminal out to the tarmac and board from the ground. This is important mainly because you’ll need to make sure you’re at the gate to catch the shuttle bus to the plane. If the last shuttle has departed from the terminal, you won’t be able to board your flight.
Airport procedures seem more efficient than in the US. Baggage handling and actual boarding are quicker. A half-hour between your arriving flight and a departing flight is not uncommon. Japanese airlines seem to have no problem boarding a full plane in about 15 minutes, which would be impossible here in the US. One time we were delayed in getting through customs and passport control and missed our connecting flight to Nagasaki. The next flight was in 20 minutes and it was the last one for the night. We checked our luggage and sped through the airport to a shuttle bus that took us to a different terminal. We arrived at the gate literally at the last minute before the scheduled departure and we got into the tail end of the boarding line. They shut the door behind us and we took off. Our bags arrived with us too. The shuttle driver clearly knew what he was doing!
Security in Japanese airports is similar to here except that there is no TSA Pre or Clear—everyone has to go through the same rigorous procedure including removing shoes, all laptops from carry-on, etc.
Trains. The railway system can be complicated because there are many independent train systems that serve local areas. For getting to and from major cities and towns it’s fairly transparent because they are served by one of the Japan Railways (JR), which were formed when the national railway system was privatized decades ago. Japan also has high speed rail, the Shinkansen, which can be faster than taking a regional flight because you don’t need to check in early nor go through an extensive security check. The Shinkansen trains, or ‘bullet’ trains, go about 180 MPH and are very smooth. Another advantage of taking the train is that train stations are in the center of towns whereas airports are usually on the outskirts. Train tickets can be ordered from the railway system in advance or you can buy one when you get to a station. Usually you can buy a ticket at a kiosk or in person at the railway office if it’s open. Be careful though: Japan is mainly a cash based society and foreign credit cards are not always accepted. This is changing since the 2020 Olympics. The kiosks can be faster than the office, which often have lines, but not all of them accept credit cards and definitely some do not accept foreign credit cards. If you use one, you can select English so that the entire transaction is understandable. Train usage in Japan is very high so purchasing a ticket in advance especially for the Shinkansen is advised as it can sell out. Rail stations are often centers of commerce as well. They are filled with businesses—restaurants, stores, food stalls, electronics stores, etc. so they are rife with services if you need something at the last minute.

As in the airports electronic signage for departures and arrivals is in Japanese as well as Roman script so you will be able to read them and know when the train arrives and on which track. Railway staff rarely are able to communicate in English.
Trains in Japan are punctual. They arrive and depart on schedule almost all the time. The rail system is about as efficient as in Switzerland. Train usage is very high in Japan. As with just about any place in Japan trains are marvelously maintained and clean. There are luggage bins as you enter the trains where you can stow your luggage before seating. Don’t worry them being stolen. As in Europe you select and purchase a specific class of ticket and you’ll need to make sure you sit in a car that is that class.
If you’re concerned about getting a seat on a train, you can purchase a ticket in advance for a reserved seat. However JR (Japan Railway) will not send the ticket to you and you’ll have to pick it up at a JR office either at the airport or at a station. If you want to have the ticket sent to you in advance, you will have to use a third party service to do that. The advantage of using JR directly is that you can select your seat, which you cannot do with a third party site. (The latter will select a seat for you.) Purchasing a ticket in advance for the Shinkansen is recommended!
About the Shinkansen. If you’re heading to a start town from Tokyo or Osaka, the bullet train is a viable option to catching a connecting flight. Grabbing a connecting flight at Haneda to your start location is so easy that you aren’t likely to entertain taking a train instead. However if you are planning to visit Tokyo before your cycling adventure, then consider taking a train instead of heading back to the airport. For a detailed and clear explanation about using the train system and buying tickets go here. There are just a couple of remarks I will add that aren’t mentioned in the above link. If you are bringing your bike you may not want to use the train. Not only is lugging a bike box/case around a burden in Tokyo but bringing luggage on trains is limited to no more than 160 cm (= 63 inches) for combined height plus width plus depth. Your case might be too big. An option is to leave your bike at a luggage storage facility at a train station to avoid dealing with it in Tokyo. But this won’t solve the size issue. If you’re using a S&S case you should have no trouble taking your bike on the train assuming there is space in the luggage storage bins in your train car. You can bring your bike on trains in Japan (and some buses) as long as you use a rinko bag though if you’re arriving in Japan by plane it’s unlikely you’ll be using just a bag to ship your bike. But this is useful if you plan to use trains during your cycle tour. For information on how to rinko your bike, go here. For rinko supplies including bags go here.
Entering the train system is much like entering BART: put your ticket in the slot in the automatic gate, it opens and you enter, and then retrieve your ticket. If you are taking a Shinkansen you will receive two tickets when you buy them, one ticket is the base fare ticket and the second gives you access to the Shinkansen. When you first enter the station, you just put in your base fare ticket. Once inside you enter a second set of gates to enter the Shinkansen area. Here you put in BOTH your tickets as the same time—not separately—and retrieve them on the other side. The automatic gate will read them both at the same time.
In town. Towns where tourism thrives such as Kanazawa or Hiroshima or any big city such as Tokyo or Osaka have very well developed public transportation systems. Usually you can purchase a one-day ticket that lets you hop on and off buses and light rail so you can tour the town at will. You can purchase a ticket at the Tourist Information offices.

Taxis. I can’t recall if we have ever seen an Uber of Lyft in Japan. But we have seen many taxis. Taxis in Japan are operated very professionally. Drivers are well dressed and always—as do bus drivers and train operators—wear white gloves. In the big cities taxi drivers are familiar dealing with Western tourists even if they can only speak Japanese. If you’re heading to a well-known hotel, they will probably know exactly where and how to go. If you have the address, you can show it to the driver. If you’re heading from a hotel to a location, you can ask the front desk to summon a taxi at a specific time and tell them the destination. That will be conveyed to the driver so you don’t need to be concerned about communicating with the driver. As in restaurants—really everywhere in Japan—you do not tip taxi drivers.
Safety. The biggest crime in cities is pickpocketing but it doesn’t seem to be anywhere at the level you’d find in Europe or the US. Armed robbery and mugging are very rare. On tours we’re mostly in the countryside and smaller towns where the level of crime is even lower. We’ve never had a problem leaving our bicycles outside a shrine, restaurant, public toilet, or shop and not locking them.
Starting a ride in a city. Japanese cities just as here and in Europe can have dense car traffic and it’s only when you get outside the urban center that roads calm down and you can relax. There are usually recommended bike routes to get in and out but as here it’s often a “bike route” i.e. just painted lines on a road that has no additional shoulder or room to accommodate cyclists, as opposed to a bike lane or bikeway. Despite how hectic traffic can be in some Japanese cities, the speed is often low and drivers are more attuned to cyclists due to how common it is to cycle to run errands in Japan. As mentioned before riding on sidewalks is acceptable in Japan especially if there is an explicit sign allowing it. Riding in the road and then jumping up onto a sidewalk or multi-use path when necessary is common in Japan. Despite the very well developed train network in Japan it still has a huge amount of lorries hauling goods everywhere. Even though they are smaller than the trucks in the US, the roads are narrow and they can appear very intimidating. Although they may seem to driving very close to you they know to pull out as they pass you to give you space. If they can’t pass, they will slow down and wait until they can.


































